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Our DeepFaceMouse paper is out
Excited to share that our latest paper, "DeepFaceMouse enables scalable prediction of large-scale brain activity from facial dynamics in mice," has been published in Cell Reports Methods by Cell Press This work started with a simple but fundamental question: Can facial dynamics serve as a noninvasive window into brain-wide neural activity? To address this challenge, we developed DeepFaceMouse, a deep learning framework that accurately tracks mouse facial movements and predict
2 days ago


Our VR paper is out!
Excited to share our new bioRxiv preprint from the Yildirim Lab: “Deterministically Synchronized Widefield Imaging and Virtual Reality Platform for Multimodal Brain–Behavior Recording” In this work, we developed a hardware-synchronized widefield calcium imaging and virtual reality (VR) platform that enables millisecond-precision alignment between: • Brain-wide neural activity • Pupil dynamics • Orofacial behavior • Locomotion • Closed-loop VR environments A major challenge in
May 20


Our NeuroPupil paper is out
Excited to share our new bioRxiv preprint: “NeuroPupil: A generalization-first framework for scalable and biologically informative cross-species pupillometry” In this work, we developed NeuroPupil, a deep learning framework for scalable and biologically informative pupil tracking across mice and humans. We systematically benchmarked training strategies and architectures across diverse behavioral conditions and disease models, including: 🧠 PTEN-associated autism spectrum diso
May 19


Our New Collaborative Paper is Out
We are excited to share our latest collaborative study: “Integrated Collagen Architecture and Composition Improve Risk Stratification in Triple-Negative Breast Cancer.” In this work, we combined multimodal histopathology, collagen imaging, and artificial intelligence–based computational analysis to investigate how extracellular matrix (ECM) organization influences disease progression in triple-negative breast cancer (TNBC). Our findings show that quantitative collagen archite
May 14


We attended Optica Biophotonics Conference (05/04/26)
I had a fantastic time at the Optica Biophotonics Congress this year! I’m especially proud to share that two of our lab’s abstracts were selected as finalists in the Optics in the Brain section — a great recognition of the team’s hard work and creativity. A special shoutout to Tenesha Connor, who delivered an outstanding oral presentation, showcasing her side project and truly rocking the stage. It’s always rewarding to see trainees step into the spotlight with confidence and
May 5


Congratulations to Kemal on his first-author paper accepted in Cell Reports Methods.
A fantastic milestone reflecting his dedication to advancing large-scale neuro + AI methodologies. We celebrated the moment—and added a little protection for future success 🧿 Looking forward to the next breakthroughs. #Neuroscience #ArtificialIntelligence #Research #Innovation
Apr 23


Important milestone for the lab!
A great start to April! I had the opportunity to present my midterm seminar today, reflecting on the journey of building my lab at the Cleveland Clinic Research . This milestone is truly a team effort. I am incredibly grateful to work alongside such a talented and dedicated group of trainees who are driving our work forward every day. Seeing how far we’ve come—from building new imaging systems to deploying deep learning models —has been deeply rewarding. Most importantly, th
Apr 5


Tenesha Connor received a best abstract award at MD Anderson International Cancer Neuroscience Symposium
Congratulations our graduate student Tenesha who received a best abstract award at the Neuroplasm section at MD Anderson International Cancer Neuroscience symposium held on February 18-20, 2026.
Feb 22
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